PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013001-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 646aa    MW: 72828.2 Da    PI: 4.8761
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013001-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-11444484955
                         HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         E rRR+++N++f+ Lr+++P+ +      K +K++iL  A+eY+k+L+
  WALNUT_00013001-RA 444 E-RRREKLNERFFILRSMVPSiN------KEDKVSILDDAIEYLKELE 484
                         4.689****************77......9***************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.3E-4917195IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088813.922434483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-12438488No hitNo description
SuperFamilySSF474598.11E-15438501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15439501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12441489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-9444484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MKSYMLAPME ERVPKNLTKQ LALAVRSIQW SYAIFWSLSA RQPGVLEWRD GYYNGDIKTR  60
KTIQAIELNA DQLGLQRSEQ LRELYESLSA GEANPQSRRP SVALSPEDLS DTEWYYLVCM  120
SFVFNIGQGL PGRTFANDQP IWMCNAHFAD SKAFSRSLLA RTLVCFPFLG GVIELGVTER  180
VLEDPSLIQH IKTSFLEIPY TAIISKKYTG AVHTRNGNSP ACAVFDQDIP ENKLISYVGC  240
EEFGIVSPND SSNGFEPNQP EEGSFMVEGI NGGASQVQSW QFMDDEFSNC VLHSMNSSDC  300
ISQTFVEPEK AVFTPKGELV KEDFLQEFQE YNHTKMNSLD LQSDDLHYQS VLSSLLESSH  360
RMILGPSFQK YHHESSFVSW NIGGLANFQN SGGRTPQNLL KKVLLAVPRM HVGGSPDSPE  420
DNGNKDGVWR PGADDMGVNH AVAERRREKL NERFFILRSM VPSINKEDKV SILDDAIEYL  480
KELERRVEEL TDVEARTKRK YQDTVERTSD NYGNDIINNT KKPLINKRKV CDIDETEPEI  540
NYNVSKESST DNVTVSMINK EVLIEMRCPW KEGVLLEIMD VLSNLQLDCH SVQSSTIEGI  600
LSLSFKSKFK GSVVASAGII KQALERFTRK PMAAVQDIEN TIDDIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-153019524192Transcription factor MYC3
4rqw_B7e-153019524192Transcription factor MYC3
4rs9_A7e-153019524192Transcription factor MYC3
4yz6_A7e-153019524192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238828.10.0PREDICTED: transcription factor EGL1
SwissprotQ9FN690.0GL3_ARATH; Transcription factor GLABRA 3
TrEMBLM5W9510.0M5W951_PRUPE; Uncharacterized protein
STRINGVIT_02s0025g03450.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.10.0bHLH family protein